Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKEGFAVIGLGRFGGSICRSLVEQGMEVLAIDSDEERVNEYMSIATHAVIANSTDENALRQLGIRNFEHVIVAIGEDIQSSILTTLILKEMGVKYVTAKATNDKHAKLLDKIGADRVVHPERDMGRRIAHYIVSKNMLDYLELSDEYSLVEISVSDPRFLGKSLVDLDFRNSFGVNIVGIKKDKQMIITPEANDVLHEGDILIVIGSDDDIERLQEKIQ
1LSU Chain:B ((13-144))
----FAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIGANIQASTLTTLLLKELDIPNIWVKAQNYYHHKVLEKIGADRIIHPEKDMGVKIAQSLSDEN-----------------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1LSU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -110671 for 1026 contacts (-107.9/contact) +
2D Compatibility (PS) -13933 + (NN) -842 + (LL) 5880
1D Compatibility (HY) -13200 + (ID) 4100
Total energy: -136866.0 ( -133.40 by residue)
QMean score : 0.710
(partial model without unconserved sides chains):
PDB file :
Tito_1LSU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1LSU-query.scw
PDB file :
Tito_Scwrl_1LSU.pdb
: