Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MINQVYRLVSE-RQFEEANIEEA-LTEDVVVVRPTYLSICAADQRYYTGSRGKEMLSKKLPMALIHEGVGQVTYDATG--EFEIGTKVVMIPNTPTEDD---PVIAENYRRSSLFRSSGYDGLMQENVFMRRDRVVRLPENMDMEVAAYSELISVAFHAITRFKQKANANQSVFGVWGDGNLGFITCLLLKTIYPESKVIIFGKTQYKLDFFS-FVDEAHLVDE------I--PEGLVIDNAFECAGGKGSQYAVEQIIDLIKPEGTISLLGVSENPIEFNS-RMVLEKGLTVFGSSRSG-KEDFQNTVNFLSENERAVEYLSSLIGQRKVVRNLQDIIEAFETDLRNPFGKTVMEWKV |
| 2DQ4 Chain:A ((1-342)) | --MRALAKLAPEEGLTLVDRPVPEPGPGEILVRVEAASICGTDLHIWKWDAWAR-GRIRPPLVTGHEFSGVVEAVGPGVRRPQVGDHVSLESHIVCHACPACRTGNYHVCLNTQILGVDRDGGFAEYVVVPAENAWVNPKDLPFEVAAILEPFGNAVHTVYAGS---GVSGKSVLITGAGPIGLMAAMVVRA-SGAGPILVSDPNPYRLAFARPYADRLVNPLEEDLLEVVRRVTGSGVEVLLEFSGN---EAAIHQGLMALIPGGEARILGIPSDPIRFDLAGELVMRGITAFGIAGRRLWQTWMQGTALVY-SGRV--DLSPLLTHRLP---LSRYREAFGLLASGQAVKVILDPK- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2DQ4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -175258 for 2847 contacts (-61.6/contact) +
2D Compatibility (PS) -35024 + (NN) -8507 + (LL) 1820
1D Compatibility (HY) -8400 + (ID) 3050
Total energy: -228419.0 ( -80.23 by residue)
QMean score : 0.421
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