Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VKQAIGFIDSGVGGLTVVREVLKQLPHEQVYYLGDTARCPYGPRDKEEVAKFTWEMTNFLVDRGIKMLVIACNTATAAALYDIREKLDIPVIGVIQPGSRAALKAT--RNNKIGVLGTLGTVESMAYPTALKGLNRRVEVDSLACPKFVSVVESGEYKSAIAKKVVAESLLPLKSTKIDTVILGCTHYPLLKPIIEN-FMGDGV-----AVINSGEETASEVSALLDYHNLLDATDEEIEHRFFTTGSTQIFKDIAKDWLNMPDMTVEHIKLGK
2W4I Chain:E ((3-254))
----IGVFDSGVGGFSVLKSLLKARLFDEIIYYGDSARVPYGTKDPTTIKQFGLEALDFFKPHEIELLIVACNTASALALEEMQKYSKIPIVGVIEPSILAIKRQVEDKNAPILVLGTKATIQSNAYDNALKQ-QGYLNISHLATSLFVPLIEESILEGELLETCMHYYFTPLEILP-EVIILGCTHFPLIAQKIEGYFMGHFALPTPPLLIHSGDAI---VEYLQQKYALKNNACTFPKVEFHASGDVIWLERQAKEWLK-------------
General information:
TITO was launched using:
RESULT:
Template:
2W4I.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -161333 for 2165 contacts (-74.5/contact) +
2D Compatibility (PS) -25830 + (NN) -6757 + (LL) 2048
1D Compatibility (HY) -21600 + (ID) 4250
Total energy: -217722.0 ( -100.56 by residue)
QMean score : 0.557
(partial model without unconserved sides chains):
PDB file :
Tito_2W4I.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2W4I-query.scw
PDB file :
Tito_Scwrl_2W4I.pdb
: