Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFKKLFRQDENILNSELAEDLPI-PRHVAIIMDGNGRWAKKRFLPRIAGHKEGMDVVKRVTRYANAIGIDVLTLYAFSTENWKRPTDEVDFLMKLPVEFFDSFVPELIEENVRVNVMGYRENLPDHTMRAVEKAIADTAHCTGLTLNFALNYGGRSEIITAAKEAMKELELEGKSADDLTEEKLNDHLMSSGLGDPDLLIRTSGELRLSNFMLWQLAYSEFYFTDTHWPDFSKEDFLQAIIEYQNRSRRFGGL
3SGV Chain:A ((17-238))
-----------------------GCRHVAIIMDGNGRWAKKQGKIRAFGHKAGAKSVRRAVSFAANNGIEALTLYAFSSENWNRPAQEVSALMELFVWALDSEVKSLHRHNVRLRIIGDTSRFNSRLQERIRKSEALTAGNTGLTLNIAANYGGRWDIVQGVRQLAEKVQQGNLQPDQIDEEMLNQHVCMHELAPVDLVIRTGGEHRISNFLLWQIAYAELYFTDVLWPDFDEQDFEGALNAFAN--------
General information:
TITO was launched using:
RESULT:
Template:
3SGV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -103167 for 1669 contacts (-61.8/contact) +
2D Compatibility (PS) -24192 + (NN) -9393 + (LL) 2144
1D Compatibility (HY) -14000 + (ID) 5250
Total energy: -153858.0 ( -92.19 by residue)
QMean score : 0.535
(partial model without unconserved sides chains):
PDB file :
Tito_3SGV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3SGV-query.scw
PDB file :
Tito_Scwrl_3SGV.pdb
: