Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKIVLLLALITVVLTVGACSDNKKETEEKANKTEEESATFLTTISTKDFK-QKMADKTTGFVYVGRPTCEDCQAFQPILKKELKKRQPDQKMAYYNTDKASEKSRDNMIALLEKMDIDSVPTMVYLKDGKVASTYAATDEPAKLTNWMNKVSGEVSE
1W4V Chain:A ((2-106))
----------------------------------------TFNIQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHT--------DLAIEYEVSAVPTVLAMKNGDVVDKFVGIKDEDQLEAFLKKLI-----
General information:
TITO was launched using:
RESULT:
Template:
1W4V.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -27947 for 744 contacts (-37.6/contact) +
2D Compatibility (PS) -11333 + (NN) -7583 + (LL) 4396
1D Compatibility (HY) -7600 + (ID) 1100
Total energy: -51167.0 ( -68.77 by residue)
QMean score : 0.589
(partial model without unconserved sides chains):
PDB file :
Tito_1W4V.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1W4V-query.scw
PDB file :
Tito_Scwrl_1W4V.pdb
: