Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNWTIWDKSQKVPYTLLLEADPSEKQIAKYLDKSHVFQLMHDDIVIGIICLFPLNNDQLEIMNIAVSSDYRNQGIGKKLLEKAFDYAIHKHFIKIIVKTGNSSIDQLAFYQKNGFRMQHIIPNYFTENYPNQTITENGIVCLDQIILLKEIKS
1YVK Chain:A ((18-155))
------------LYDLLLLADPSKDIVDEYLERGECYTAWAGDELAGVYVLLKTRPQTVEIVNIAVKESLQKKGFGKQLVLDAIEKAKKLGADTIEIGTGNSSIHQLSLYQKCGFRIQAIDHDFFLRHYDE-DIFENGIQCRDMVRLYLDL--
General information:
TITO was launched using:
RESULT:
Template:
1YVK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -91951 for 1010 contacts (-91.0/contact) +
2D Compatibility (PS) -15143 + (NN) -7607 + (LL) 1188
1D Compatibility (HY) -12800 + (ID) 2600
Total energy: -128913.0 ( -127.64 by residue)
QMean score : 0.459
(partial model without unconserved sides chains):
PDB file :
Tito_1YVK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YVK-query.scw
PDB file :
Tito_Scwrl_1YVK.pdb
: