Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MDRILNNKWSIRIIALLLAAILFTSVNANNNNATTFSTTSSSDSEVIENVPVKVYYDKTNLYISGIPETVTVTLSGPRSIVQSAKAQQDFTVYADLKNASIGTQEVKLQVKDVSDRLKVKVNPATVNVNVQEKVTKKFSVDVELSKSVVADGYQAGTPIIDPKKVSITGAKDTIEQIAYVKATLESDGKHKSEFTDKATVSVFDSNLNKLDVEVNPQEVEVTVPVEKVGKSVPVKIKQEGTPESDIEISSMTPDKSEVVVVGDDAVLEKIKEIEIPIDVSKIKADTVKEVTVPVPTGAKSVQPTTIEVKIKTVKKSEANNNPTTSDSNNQDTDTTDNNTDDSGDNNTKISKSFSNMQVYMSGLKNTFDAQMITPANGKVSVTITGEKKTVDGIAAKDLSVIANLSKSKAGSYSIPLELNGLPDNVAYVINPRQADFIITDKEASIEVPSKST |
| 4E9L Chain:A ((678-991)) | ----------------------FVAGPLDAAHSSITLNPDKPVVGGTVTAIWTAK-DANDNPVTGLNPDAPSLSG----------AAAAGSTASGWTDNGDGTWTAQISLGTTAGELDVM---PKLNGQDAAANAAKVTVV---------------ADALSSNQSKVSVAEDHVK----------------AGESTTVTLVAKDAHGNAI-------------------SGLSLSASLTGTASEGATVSSWTEKGDG----------------SYVATLTTGGKTGELRVMPLFNGQPAATEAAQLTVIAGEMSSANSTLVADNKTPTVKTTTELTFTMKDAYGNPV-------------TGLKPDAPVFSGAASTGSERPSAGNWTEKGNGVYVSTLT-----LGSAAGQLSVMPRVNG---------------QNAVAQPLVLNVAG--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4E9L.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 109407 for 2463 contacts (44.4/contact) +
2D Compatibility (PS) -33683 + (NN) -11347 + (LL) 11052
1D Compatibility (HY) 4000 + (ID) 1950
Total energy: 77479.0 ( 31.46 by residue)
QMean score : 0.125
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