Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -----------------------MSGI---QWIKLSVNMFDD-EKIKLLEKMPEGNQMLIVWIRLLALA-GKTNDKGRIY---LNENVPYTEDMLATLFNRDVGIIRVTLHTLQSFGMIQKTENGLIEIENWEK-HQNVDGMERVREQTRKRVEKHREAMRQNRIASGDSKGNKECNVTSSVTVTQSNAIDIDKELDKDINNNNSDLNFKDFWEQNGFGMMLPVELEKLLAWVDDFAGNREIV------MKALEVTSEQGANKRNYAYVNKILKNW----------------ESRGFKTIADVDAAEKQRQIELEQ------KYNKPTYNKYNK------PVKEEVLPDWFDKDQKQTKQETSTTGSS--------------------------------------EDLEKQVAEIKAQLAARNEVQA- |
| 4LYP Chain:A ((34-449)) | SEFAFVKIASDGKGFTRYGEPYLIRGANYWQGMNLGADDCSGGDRKRMELEIKQMAEMGINNLRVMASSEGPDDQPYRMRPSMMPQPGKYNEGVFVGLDYLLDTMDRYNMTAVMTLGNFWQWSGGFGQYVAWITGNQTIPYP--VGDVTYDEFTQFAARFYNDS--EIAPKANKLFKDHIYTVQNRRNTVN-GKIYKED-------PVIMSWQIANEPQEAPASWFEEISTFIKKGAPKHLVSAGLESKLDEYDFDRAHDHKNIDYTTCHCWVENWGIYDPADPDGLPHANEYMHDFLESRSKWAAQLNKPIVMEEFGMARDAWRNPEDETYKYLPSTPTSHKDEYYQKAFNQIVSLASNR-SFSGSNFWAYGGEGRSTYPPNPYGMVWLGDPPHEPHGWYSVYSNDTTVQIIKDYNANLLKVQKELSK |
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General information:
TITO was launched using:
| RESULT:
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Template: 4LYP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 80806 for 2441 contacts (33.1/contact) +
2D Compatibility (PS) -32333 + (NN) -2714 + (LL) 588
1D Compatibility (HY) -8000 + (ID) 2300
Total energy: 36047.0 ( 14.77 by residue)
QMean score : 0.158
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