Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMKKKYGILALALTAALTLSACGGKEEPE----AANQKVQTITVGTGTQFPNVCFLDENGKLTGYDVELVKEIDKRL---PGYKFKFKTMDFSNLLVSLGAGKVDIVAHQMEKSKEREKKFLFNDVAYNNFPLQLTVLDSNNSINSTKDLAGKRVITSATSNGALVLKKINEEQGNNFEIAYEGQGSNDTANQLKTGRADATISTPFAVD-FQNKTSAIKEKVVGDVLSNAKVY-FMLGKDETKLSKKVDEALQSIIDDGTLKKLSEKWLGADYSKEQY
2YJP Chain:A ((45-279))----------------------------AATVAAIKEKGVIRIGVFGDKPPFGYVDANGKNQGFDVEIAKDLAKDLLGSP-DKVEFVLTEAANRVEYVRSGKVDLILANFTQTPERAEAVDFADPYMKVALGVVSPKN--KPITDMAQLKDQTLLVNKGTTADAFFTKSHPE-----VKLLKFDQNTETFDALKDGRGVALAHDNALLWAWAKENPNF--EVAIGNLGPAEFIAPAVQKGNADLLNWVNGEIAAMKKDGRLKAAYEKTLLPVY-----


General information:
TITO was launched using:
RESULT:

Template: 2YJP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -60846 for 1858 contacts (-32.7/contact) +
2D Compatibility (PS) -23995 + (NN) -6787 + (LL) 2308
1D Compatibility (HY) -6800 + (ID) 2600
Total energy: -98720.0 ( -53.13 by residue)
QMean score : 0.482

(partial model without unconserved sides chains):
PDB file : Tito_2YJP.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-2YJP-query.scw
PDB file : Tito_Scwrl_2YJP.pdb: