Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MYRLLSIAFFGIAVICLLFPWMSSGIDAATFELVYEPAYKLIWMQPIIIVGYLGFLCTIFIPKFQRGKNRIVPFIGILILVLGLLNLAVRPLFGFDSFNFSIIDAYVSELVEPAFLIAVSASILSLIMYAIYLKKSENL
3HF5 Chain:A ((2-116))
QFEKIEGRMIRILYLLV----KPESMSHEQFRKECVVHFQMSAGMP----GLHKYEVRLVAGNPTDTHVP----------YLDVGRIDAIGECWFAS------EEQYQVYMESDIRKAWFEHGKYFIGQLKPFVTEELV
General information:
TITO was launched using:
RESULT:
Template:
3HF5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -90639 for 697 contacts (-130.0/contact) +
2D Compatibility (PS) -12397 + (NN) -3134 + (LL) 2872
1D Compatibility (HY) -3600 + (ID) 550
Total energy: -107448.0 ( -154.16 by residue)
QMean score : 0.248
(partial model without unconserved sides chains):
PDB file :
Tito_3HF5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3HF5-query.scw
PDB file :
Tito_Scwrl_3HF5.pdb
: