Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LKLVLMGLPGAGKGTQAEQIVEKYNIPHISTGDMFRAAMKNNTELGRKAKSFMDNGDLVPDEVTNGIVRERLSEDDAKD-GFLLDGFPRTVEQAQELENILSDLGTELDAVINIDVEKDVLMKRLTGRWICRTCGKTYHEIYNPPKVPGKCDLDGGELYQRDDDKKETVEKRLNVNMKQTKPLLDFYSEKGKLHNINGEQEIKDVFVDVEKILASF
4NU0 Chain:B ((6-216))
MNLLIMGLPGAGKGTQAAKIVEQFHVAHISTGDMFRAAMANQTEMGVLAKSYIDKGELVPDEVTNGIVKERLSQDDIKETGFLLDGYPRTIEQAHALDKTLAELGIELEGIINIEVNPDSLLERLSGRIIHRVTGETFHKVFNPP-----VDYKEEDYYQREDDKPETVKRRLDVNIAQGEPIIAHYRAKGLVHDIEGNQDINDVFSDIEKVLTNL
General information:
TITO was launched using:
RESULT:
Template:
4NU0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -62490 for 1625 contacts (-38.5/contact) +
2D Compatibility (PS) -23412 + (NN) -16520 + (LL) 8
1D Compatibility (HY) -23200 + (ID) 6100
Total energy: -131714.0 ( -81.05 by residue)
QMean score : 0.526
(partial model without unconserved sides chains):
PDB file :
Tito_4NU0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4NU0-query.scw
PDB file :
Tito_Scwrl_4NU0.pdb
: