Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPRKGPVAKRDVLPDPIYNSKLVTRLINKMMVDGKRGKSQAILYSAFDIIAQETGKDPMEVFEQAMKNIMPLLEVKARRVGGANYQVPIEVRADRRSTLGLRWLVNYARLRGEKTMEVRVAREIMDAANNTGASVKKREDTHKMADANRAFAHYRW
3GTY Chain:S ((10-155))
----------QIPPDPVFGDVLVAKLINRVMWDGKKTIAQKIVYGAFDIIREKTKKDPLEVFRQAVENVKPVLEVRPRRVGGATYQVPIEVQEPRRTSLALRWIVEAARAKKGRPMKEKLAEEIIAAYNNTGTAIKKKEDTHRMAEANRAFAHYRW
General information:
TITO was launched using:
RESULT:
Template:
3GTY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -39444 for 1067 contacts (-37.0/contact) +
2D Compatibility (PS) -15976 + (NN) -6710 + (LL) 420
1D Compatibility (HY) -15200 + (ID) 4150
Total energy: -81060.0 ( -75.97 by residue)
QMean score : 0.584
(partial model without unconserved sides chains):
PDB file :
Tito_3GTY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GTY-query.scw
PDB file :
Tito_Scwrl_3GTY.pdb
: