Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VEIKQIKAKDTQDIRHRVLR---PEQPEENAIYPND-DMEGTFHLGAFEKDVLLGVASFYPEKSTVIMNPAQYRIRGVATERRMRLKGLGTALLAEGEAEIWTRGA-DIIWCNARIVAVGFYEKHGYRKVGKSFVIPGIGEHYLMKKVNPNKKVDQDN
1XEB Chain:A ((10-149))
--HADLTLKELYALLQLRTEVFVVEQKCPYQEVDGLDLVGDTHHLMAWRDGQLLAYLRLLDPVR----HEGQVVIGRVVSSSAARGQGLGHQLMERALQAAERLWLDTPVYLSAQAHLQAYYGRYGFVAVTEVYLEDDIP-HIGMRR-----------
General information:
TITO was launched using:
RESULT:
Template:
1XEB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -23079 for 843 contacts (-27.4/contact) +
2D Compatibility (PS) -13569 + (NN) -540 + (LL) 1528
1D Compatibility (HY) 4800 + (ID) 750
Total energy: -31610.0 ( -37.50 by residue)
QMean score : 0.190
(partial model without unconserved sides chains):
PDB file :
Tito_1XEB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1XEB-query.scw
PDB file :
Tito_Scwrl_1XEB.pdb
: