Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNQTFIVKKEHISQYPNPLFVNKNESIWVFEEDTEYPGWIFCKVKSSGKEGWIPKQIIQISNDG---------------------KSGTVSEDYSA---RELNVKPGDKLESNR------ELNGWVWCVT---------EENEAGWVPRENLEV
1MV3 Chain:A ((374-479))
-----------------------------------------------AASSSLPAVVVETFPATVNGTVEGGSGAGRLDLPPGFMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKKLEKCRGVFPENFTE-
General information:
TITO was launched using:
RESULT:
Template:
1MV3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -9179 for 340 contacts (-27.0/contact) +
2D Compatibility (PS) -7017 + (NN) 3070 + (LL) 3368
1D Compatibility (HY) -2800 + (ID) 800
Total energy: -13358.0 ( -39.29 by residue)
QMean score : 0.392
(partial model without unconserved sides chains):
PDB file :
Tito_1MV3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1MV3-query.scw
PDB file :
Tito_Scwrl_1MV3.pdb
: