Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKKVLTFLLCSLYFVSIPAISTEEPLTLSQNRRYALTQTVVDKEMYFDAIPERPTTKIEISSFQDEALTITGETLVPNTLLSIVSLTINSNGIPVFTLSNGQFIKASREAIFNDLVSKQQSVSLDYWLKPSFVTYEAPYTNGVSEVKNNLKPYSRVHLVEQAETEHGIYYKTDSGFWISVEDLSVADNRMAKVQEVLLEKYNKDKYGIYIKQLNTQTVAGINIDRSMYSASIAKLATLYASQEQVKLGKLSLDSKFEYKDNVNQFPNSYDPSGSGKLEKKADHKLYTVKELLEATAKESDNVATNMLGYYVNNQYDSMFQTQVDTISGM----------HW-----DMKKRQISPQAAGKMMEAIYYQN-------GDIVNYLSKTDFDNTRIPKNIP--VKVAHKIGDA-YDYKHDAAIVYA-EQ-PFIMIIFTDKSS------YDDITKIADDVYQVLK |
1HZO Chain:A ((6-265)) | --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------IEEQLNTLEKY--SQGRLGVALINTEDNSQITYRGEERFAMASTSKVMAVAAVLKASEKQAGLLDKNITIKKSD-------LVAYSPITEK-HLTTGMTLAELSAATLQYSDNTAMNKILDYLGGP--AKVTQFARS-INDVTYRLDRKEPELNTAIHGDPRDTTSPIAMAKSLQALTLGDALGQSQRQQLVTWLKGNTTGDNSIKAGLPKHWVVGDKTGSGDYGTTNDIAVIWPENHAPLILVVYFTQQEQNAKYRKDIIAKAAEIVTKEIS |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 1HZO.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -84633 for 1950 contacts (-43.4/contact) +
2D Compatibility (PS) -24192 + (NN) -7216 + (LL) 13768
1D Compatibility (HY) -4000 + (ID) 2200
Total energy: -108473.0 ( -55.63 by residue)
QMean score : 0.432
|
|
|