Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -------MTRYKAQISY-DGSAFSGFQRQPNCRTVQEEIERTLKR-LNSGNDVIIHGAGRTDAGVHAYGQVIHFDLPQARDVEKLRFGLDTQCPD--DIDIVKVEQVSDDFHCRYDKHIKTYEFLVDIGRPKNPMMRNYATHYP-YPVIIELMQEAIKDLVGTHDFTGFTASGTSVENKVR------------TIFDAKIQFEASKNLLIFTFTGNGFLYKQVRNMVGTLLKIGNGRMPISQIKTILQA---------KNRDLAGPTAAGNGLYLKEIIYEDKECFSNFRK-------------------------- |
| 1GEH Chain:A ((136-443)) | FDGPAFGIEGVRKMLEIK-DRPIYGVVPKPKVGYSPEEFEKLAYDLLSNGADYMKDDENLTSPWYNRFEERAEIMAKIIDKVENETGEKKTWFANITA-DLLEMEQRLEVLADL-----GLKHAMVDVVITGWGALRYIRDLAADYGLAIHGHRAMHAAFTRNP-YHGISMFVLAKLYRLIGIDQLHVGTAEGGKWDVIQNARILRESHYKPDENDVFHLEQKFYSIKAAFPTSSGGLHPGNIQPVIEALGTDIVLQLGGGTLGHPDGPAAGARAVRQAIDAIMQ------GIPLDEYAKTHKELARALEKWGHVTP |
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General information:
TITO was launched using:
| RESULT:
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Template: 1GEH.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -3393 for 1787 contacts (-1.9/contact) +
2D Compatibility (PS) -25991 + (NN) -9076 + (LL) 700
1D Compatibility (HY) -1600 + (ID) 1500
Total energy: -40860.0 ( -22.87 by residue)
QMean score : 0.147
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