Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MILDYNKLKQETKAIVVDIIERSALKKGQIFVLGLSSSEVSG-GLIGKNSSSEIGEIIVEVILKELH-SRGIYLAVQGCEHVNRALVVEAELAERQQLEVVNVVPNLHAGG-SGQVAAFKLMTSPVEVEEIVAHAGIDIGDTSIGMHIKRVQVPLIPISRELGGAHVTALASRPKLIGGARAGYTSDPIRKF
3G5J Chain:A ((5-134))
SVIKIEKALKLDKVIFVDVRTEGEYEEDHI-------LNAINMPLFKNNEHNEVGTIY--------KMQGKHEAIQKGFDYVSYKLKDIYLQAAELALNYDNIVIYCARGGMRSGSIVNLLSSLGVNVYQLE------------------------------GGYKAYRNFVLEY-----------------
General information:
TITO was launched using:
RESULT:
Template:
3G5J.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -22549 for 926 contacts (-24.4/contact) +
2D Compatibility (PS) -13718 + (NN) -4082 + (LL) 4392
1D Compatibility (HY) -3200 + (ID) 1250
Total energy: -40407.0 ( -43.64 by residue)
QMean score : 0.280
(partial model without unconserved sides chains):
PDB file :
Tito_3G5J.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3G5J-query.scw
PDB file :
Tito_Scwrl_3G5J.pdb
: