Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKFGKKLGFLALLMSIVLILGACGKTGLGNSTGNSTKNVTKKSAKNLKLGVSISTTNNPYFVAMKDGIDKYASNKKISIKVADA--QDDAARQADDVQNFISQNVDAILINPVDSKAIVTAIKSANNANIPVILMDRGSEG-------GKVLTTVASDNVAAGKMAADYAVKKLGKK--AKAFELSGVPGASATVDRGKGFHSVAK-S-KLDILSSQSANFDRAKALNTTQNMIQGHKDVQIIFAQNDEMALGAAQAVKSAGLQ-NVLIVGIDGQPDAHDAIKKGDISATIAQQPAKMGEIAIQAAIDHYKGKK-V-----EKETISPIYLVTKDNVEKYNW |
| 1GUD Chain:A ((3-288)) | -----------------------------------------------EYAVVLKTLSNPFWVDMKKGIEDEAKTLGVSVDIFASPSEGDFQSQLQLFEDLSNKNYKGIAFAPLSSVNLVMPVARAWKKGIYLVNLDEKIDMDNLKKAGGNVEAFVTTDNVAVGAKGASFIIDKL-GAEGGEVAIIEGKAGNASGEARRNGATEAFKKASQIKLVASQPADWDRIKALDVATNVLQRNPNIKAIYCANDTMAMGVAQAVANAGKTGKVLVVGTDGIPEARKMVEAGQMTATVAQNPADIGATGLKLMVDAEKSGKVIPLDKAPEFKLVDSILVTQ-------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 1GUD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -129226 for 2341 contacts (-55.2/contact) +
2D Compatibility (PS) -28840 + (NN) -14283 + (LL) 2652
1D Compatibility (HY) -16800 + (ID) 4050
Total energy: -190547.0 ( -81.40 by residue)
QMean score : 0.618
|
|
|