Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKTGILNSHLAKLADDLGHTDRVCIGDLGLPVPNGIPKIDLSLTSGIPSFQEVLDIYLENILVEKVILAEEIKEANPDQLSRLLAKLDNSVSIEYVSHDHLKQMTQDV--KAVIRTGENTPYSNIILQSGVII
3P12 Chain:B ((8-134))
-----VLNEHISKAIATIGHFDLLTINDAGMPIPNDHRRIDLAVTKNLPRFIDVLATVLEEMEIQKIYLAEEIKEHNPTQLQQIKQLISSEIEIIFIPHEEMKSNLAHPLNKGNIRTGETTPYSNIALESNVTF
General information:
TITO was launched using:
RESULT:
Template:
3P12.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -72674 for 955 contacts (-76.1/contact) +
2D Compatibility (PS) -13838 + (NN) -10550 + (LL) 216
1D Compatibility (HY) -10000 + (ID) 2650
Total energy: -109496.0 ( -114.66 by residue)
QMean score : 0.611
(partial model without unconserved sides chains):
PDB file :
Tito_3P12.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3P12-query.scw
PDB file :
Tito_Scwrl_3P12.pdb
: