Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFHTKSLIQMAMMATLLVVLGFIPAL-PLGFIPVPIVLQNLGVMMAGVILGGRKGSLSILLFFLVGLVIPVFSGLRSTIPVLTGPTAGYVIAWLFVPLLISYGVKLVNKKN--FIAIFLIVWLAGVLFVDVAGAVWLASYTNIPLDKSLLQNLVFIPGDTIKAIIAAVVAVKYKDSFFLTEK-----
4RFS Chain:S ((3-200))
RHKTFRLVVDALLMAIVLLQNLVPFLGYIPFGPFSMTLIGLTVIVAGSALGPRDGLLIGGFWGLITFVRAFTWPSSPVAPLIFTNPLISILPRLLMGLVAGSLYLWGRHRQWSMRQAMQVAAGCAALTNTVLVLGLVFLFYQTPAVLGYVLMISLFTNGIPELILDVLVAPLIAMPLRRQWERLKPQ
General information:
TITO was launched using:
RESULT:
Template:
4RFS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -191832 for 1445 contacts (-132.8/contact) +
2D Compatibility (PS) -18549 + (NN) -7806 + (LL) 0
1D Compatibility (HY) -8800 + (ID) 1400
Total energy: -228387.0 ( -158.05 by residue)
QMean score : 0.270
(partial model without unconserved sides chains):
PDB file :
Tito_4RFS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4RFS-query.scw
PDB file :
Tito_Scwrl_4RFS.pdb
: