Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSYIEKIEANKVLDLKQIVPIEEEQMLSKTLVQRK-----DLGMTVFSLDKGQEIGRHSSP-GDAMVNILSGLAQITIDQDKFDVAAGECIVMPANIPHSLYAK--EAFQMLLVVVKPEV
1O4T Chain:A ((41-131))
-------------------------VEMAHLLSKEAMHNKARLFARMKLPPGSSVGLHKHEGEFEIYYILLGEGVFHDNGKDVPIKAGDVCFTDSGESHSIENTGNTDLEFLAVIILL--
General information:
TITO was launched using:
RESULT:
Template:
1O4T.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -64417 for 561 contacts (-114.8/contact) +
2D Compatibility (PS) -8438 + (NN) 5617 + (LL) 2548
1D Compatibility (HY) -6000 + (ID) 700
Total energy: -71390.0 ( -127.25 by residue)
QMean score : 0.331
(partial model without unconserved sides chains):
PDB file :
Tito_1O4T.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1O4T-query.scw
PDB file :
Tito_Scwrl_1O4T.pdb
: