Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAYKGYLIDLDGTIYKGKSRIPAGERFIERLQEKGIPYMLVTNNTTRTPESVQEMLRG-FNVETPLETIYTATMATVDYMNDMNRGKTAYVIGEEGLKKAIADAGYVEDTKNPAYVVVGLDWNVTYDKLATATLAI-QNG-ALFIGTNPDLNIPTERGLLPGAGSLNALLEAATRIKPVFIGKPNAIIMNKALEILNIPRNQAVMVGDNYLTDIMAGINNDIDTLLVTTGFTTVEEVPDLPIQPSYVLASLDEWTFNEG
1YV9 Chain:A ((3-256))
LDYQGYLIDLDGTIYLGKEPIPAGKRFVERLQEKDLPFLFVTNNTTKSPETVAQRLANEFDIHVPASLVYTATLATIDYMKEANRGKKVFVIGEAGLIDLILEAGFEWDETNPDYVVVGLDTELS--YEKVVLATLAIQKGALFIGTNPDKNIPTERGLLPGAGSVVTFVETATQTKPVYIGKPKAIIMERAIAHLGVEKEQVIMVGDNYETDIQSGIQNGIDSLLVTSGFTPKSAVPTLPTPPTYVVDSLDEWTFEG-
General information:
TITO was launched using:
RESULT:
Template:
1YV9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -157329 for 2168 contacts (-72.6/contact) +
2D Compatibility (PS) -27729 + (NN) -17770 + (LL) -64
1D Compatibility (HY) -25200 + (ID) 7300
Total energy: -235392.0 ( -108.58 by residue)
QMean score : 0.650
(partial model without unconserved sides chains):
PDB file :
Tito_1YV9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YV9-query.scw
PDB file :
Tito_Scwrl_1YV9.pdb
: