Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTQLLQLHHVTKKYH--KHTAVNDVTVSIPTGKIIGLLGPNGSGKTTIIKMINGLLQPDKGDIVIDGYRPS----VETKKIISYLPDTSYLQENMKIKDVVTLFEDFYNDFDSKVAYQLFEDLNLNP--R-----------ERLKNLSKGNKEKVQLILVMSRKARLYILDEPIGGVDPAARDYILKTIISNYSNDASVLISTHLISDIEPILDEVIFLKEGEIDLQGNADDLREEHNCSIDALFRERFKK
3GD7 Chain:A ((18-247))
--GQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFS-GTFRKNLDPNAAH----SDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF-ADCTVILCEARIEAM-LECDQFLVIEENKVRQYDSILELYHYPADRFVAGFIGSPKM
General information:
TITO was launched using:
RESULT:
Template:
3GD7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -125214 for 1578 contacts (-79.3/contact) +
2D Compatibility (PS) -22898 + (NN) -9855 + (LL) 184
1D Compatibility (HY) -12400 + (ID) 2300
Total energy: -172483.0 ( -109.30 by residue)
QMean score : 0.481
(partial model without unconserved sides chains):
PDB file :
Tito_3GD7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GD7-query.scw
PDB file :
Tito_Scwrl_3GD7.pdb
: