Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRNKKKLHGFFNFVRWLLVVLLIIVGLALVFNKPIRNAFIAHQSNHYQISRVSKKTIEKNKKSKTSYDFSSVKSISTESILSAQTKSHNLPVIGGIAIPDVEINLPIFKGLGNTELSYGAGTMKENQIMGGQNNYALASHHVFGLTGSSKMLFSPLEHAKKGMKVYLTDKSKVYTYTITEISKVTPEHVEVIDDTPGKSQLTLVTCTDPEATERIIVHAELEKTGEFSTADESILKAFSKKYNQINL
4O8T Chain:B ((31-185))
----------------------------------------------------------------------------------------KLPVIGGIAIPELEMNLPIFKGLDNVNLFYGAGTMKREQVMG-EGNYSLASHHIFGVDNANKMLFSPLDNAKNGMKIYLTDKNKVYAYEIREVKRVTPDRVDEVDDRDGVNEITLVTAEDLAATERIIVKGDLKETKDYSQTSDEILTAFNQPYKQFY-
General information:
TITO was launched using:
RESULT:
Template:
4O8T.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -58118 for 853 contacts (-68.1/contact) +
2D Compatibility (PS) -17002 + (NN) -8614 + (LL) 7076
1D Compatibility (HY) -18800 + (ID) 4550
Total energy: -100008.0 ( -117.24 by residue)
QMean score : 0.444
(partial model without unconserved sides chains):
PDB file :
Tito_4O8T.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4O8T-query.scw
PDB file :
Tito_Scwrl_4O8T.pdb
: