Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTTVYLSLGSNIGDRETFLKQALFSIDHLQKTKVAQISAIYETAAWGNTNQEDFFNICCQVETDLAPFELLDYCQEIEKRLKRVRH-EHWGPRTIDIDILLFGNQVINQEDLVVPHPYMTKRAFVLVPLLEIAPQLSLPNGSKLEDYL-----EKLNLGEVHYLKPVE
3HD1 Chain:A ((1-156))
-TVAYIAIGSALASPLEQVNAALKALGDIPESHILTVSSFYRTPPLGPQDQPDYLNAAVALETSLAPEELLNHTQRIELQQGRVRKAERWGPRTLDLDIMLFGNEVINTERLTVPHYDMKNRGFMLWPLFEIAPELVFPDGEMLRQILHTRAFDKLNKW---------
General information:
TITO was launched using:
RESULT:
Template:
3HD1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -132207 for 1122 contacts (-117.8/contact) +
2D Compatibility (PS) -15962 + (NN) -5963 + (LL) 744
1D Compatibility (HY) -14400 + (ID) 3300
Total energy: -171088.0 ( -152.48 by residue)
QMean score : 0.627
(partial model without unconserved sides chains):
PDB file :
Tito_3HD1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3HD1-query.scw
PDB file :
Tito_Scwrl_3HD1.pdb
: