Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-----------------MSRKVRRHFTDDFKQQIVDLYNV--GRKRSSLIKEYELTPSTFDKWVRQAKTTGSFKSVDNLTDEQRELIELRKHNKELEMQLDILKQAAVIMAQKGK-----------------------------
1LJ9 Chain:A ((2-145))
TDILREIGMIARALDSISNIEFKELSLTRGQYLYLVRVCENPGIIQEKIAELIKVDRTTAARAIKRLEEQGFIYRQEDASNKKIKRIYATEKGKNVYPIIVRENQHSNQVALQGLSEVEISQLADYLVRMRKNVSEDWEFVKKG
General information:
TITO was launched using:
RESULT:
Template:
1LJ9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -7215 for 649 contacts (-11.1/contact) +
2D Compatibility (PS) -10298 + (NN) -5057 + (LL) 0
1D Compatibility (HY) 1600 + (ID) 400
Total energy: -21370.0 ( -32.93 by residue)
QMean score : 0.410
(partial model without unconserved sides chains):
PDB file :
Tito_1LJ9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1LJ9-query.scw
PDB file :
Tito_Scwrl_1LJ9.pdb
: