Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MILREFCAENLTDLTRLDKAIISRVELCDNLA-AGGTTPSYGVIKEANQYLHEKGISVAVMIRPRGGNFVYNDLELRIMEEDILRAVELESDALVLGILTSNNHIDTEAIEQLLPATQ--GLPLVFHMAFDVIPKSDQKKAIDQLVALGFTRILLHGSSNGEP-IIENIKHIKALVEYANNRIEIMVGGGVT-AENYQYICQETGVRQAHGTRITQ
3TSM Chain:A ((84-249))
------------LAKAYEEGGAACLSVLTDTPSFQG---APEFLTAARQA---CSLPALR------KDFLFDP-------YQVYEARSWGADCILIIMASV----DDDLAKELEDTAFALGMDALI-----EVH--DEAE-MERALKLSSRLLGVNNRN--LRSFEVNLAVSERLAKMAPSDRLLVGESGIFTHEDCLRLEK-SGIGTFLIGESLM
General information:
TITO was launched using:
RESULT:
Template:
3TSM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -108655 for 1255 contacts (-86.6/contact) +
2D Compatibility (PS) -18011 + (NN) -6515 + (LL) 3608
1D Compatibility (HY) -5200 + (ID) 850
Total energy: -135623.0 ( -108.07 by residue)
QMean score : 0.454
(partial model without unconserved sides chains):
PDB file :
Tito_3TSM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TSM-query.scw
PDB file :
Tito_Scwrl_3TSM.pdb
: