Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MALELLTPFTKVELEEKKRDTNRKQIGIMGGNFNPVHNAHLVVADQVRQQLCLDQVLLMPEFQPPHIDKKETIDEQHRLKMLELAIEGIDGLSIEPIEIERKGISYTYDTMKLLIEKNPDVDYYFIIGADMVEYLPKWHRIDELVKMVQFVGVQRPKYKAGTSYPVIWVDLPLMDISSSMIRQFIKSNRQPNYLLPKEVLDYIRKEGLYK
3MMX Chain:C ((4-190))
-----------------------RKIGIIGGTFDPPHYGHLLIANEVYHALNLEEVWFLPNQI--------ITSVESRLQMLELATEAEEHFSICLEELSRKGPSYTYDTMLQLTKKYPDVQFHFIIGGDMVEYLPKWYNIEALLDLVTFVGVARPGYKLRTPYPITTVEIPEFAVSSSLLRERYKEKKTCKYLLPEKVQVYIERNGLYE
General information:
TITO was launched using:
RESULT:
Template:
3MMX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -171297 for 1386 contacts (-123.6/contact) +
2D Compatibility (PS) -19672 + (NN) -13209 + (LL) 2172
1D Compatibility (HY) -18000 + (ID) 4300
Total energy: -224306.0 ( -161.84 by residue)
QMean score : 0.603
(partial model without unconserved sides chains):
PDB file :
Tito_3MMX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3MMX-query.scw
PDB file :
Tito_Scwrl_3MMX.pdb
: