Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSAIDKLVKASHLIDMNDIIREGNPTLRKVAEEVTFPLSEKEEILGEKMMQFLKHSQDPIMAEKLGLRGGVGLAAPQLDISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGEGCLSVDREVPGYVVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYDRINEKNPFAVKEGLLILE
1RL4 Chain:A ((11-168))
------------------IVKYPDPILRRRSEEVT-NFDDNLKRVVRKMFDIMYESK------------GIGLSAPQVNISKRII------VWN-------------RIFINPSIVEQSLVKLKLI--EGCLSFP-GIEGKVERPSIVSISYYDINGYKHLKILKGIHSRIFQHEFDHLNGTLFIDKMTQVDKKKVRPKLNELI
General information:
TITO was launched using:
RESULT:
Template:
1RL4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -50949 for 1117 contacts (-45.6/contact) +
2D Compatibility (PS) -15391 + (NN) -2737 + (LL) 2952
1D Compatibility (HY) -14800 + (ID) 2900
Total energy: -83825.0 ( -75.04 by residue)
QMean score : 0.440
(partial model without unconserved sides chains):
PDB file :
Tito_1RL4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1RL4-query.scw
PDB file :
Tito_Scwrl_1RL4.pdb
: