Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-MAKFGFLSVLEEELDKHLQYDFAMDWDKKNHTVEVTFILEAQNSSAIETVDDQGETSSEDIVFEDYVLFYNPVKSRFDAEDYLVTIPYEPKKGLSREFLAYFAETLNEVATEGLSDLMDFLTDDSIEEFGLSWDTDAFENGRAELKETEFYPYPRY
1JYO Chain:A ((1-130))
LQAHQDIIANIGEKLGLPLTFD---------DNNQCLLLLDSDIFTSIEAKDD-------IWLLNGMIIPLSPVCG---------DSIWRQIMVINGELAANNEGTLAYIDAAETLLLIHAITDLT-NTYHIISQLESFVNQQEALKNI-LQEYAKV
General information:
TITO was launched using:
RESULT:
Template:
1JYO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -11416 for 835 contacts (-13.7/contact) +
2D Compatibility (PS) -13498 + (NN) -888 + (LL) 1784
1D Compatibility (HY) -8000 + (ID) 1200
Total energy: -33218.0 ( -39.78 by residue)
QMean score : 0.149
(partial model without unconserved sides chains):
PDB file :
Tito_1JYO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JYO-query.scw
PDB file :
Tito_Scwrl_1JYO.pdb
: