Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKATGIVRRIDDLGRVVIPKEIRRTLRIREGDPLEIFVDRDGEVILKKYSPISELGDFAKEYADALYDSLGHSVLICDRDVYIAVSGSSKKDYLNKSISEMLERTMDQRSSVLESDAKSVQLVNGIDEDMNSYTVGPIVA-NGDPIGAVVIFSKD-QTMGEVEHKAVETAAGFLARQMEQ
1F5M Chain:A ((127-178))
-------------------------------------------------------------------------------------------------------------------------------GETKSEIVVPIISNDGKTLGVIDIDCLDYEGFDHVDKEFLEKLAKLINKSCV-
General information:
TITO was launched using:
RESULT:
Template:
1F5M.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -17773 for 256 contacts (-69.4/contact) +
2D Compatibility (PS) -5757 + (NN) -5331 + (LL) 8728
1D Compatibility (HY) -3200 + (ID) 550
Total energy: -23883.0 ( -93.29 by residue)
QMean score : 0.621
(partial model without unconserved sides chains):
PDB file :
Tito_1F5M.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1F5M-query.scw
PDB file :
Tito_Scwrl_1F5M.pdb
: