Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNNIAYIALGSNIGDRETYLRQAVALLHQHAAVTVTKVSSIYETDPVGYEDQAQFLNMAVEIKTSLNPFELLELTQQIENELGRTREV-RWGPRTADLDILLFNRENIETEQLIVPHPRMYERLFVLAPLAEICQQVEKEATSAETDQEGVRVWKQKSGVDEFVHSES
3HD2 Chain:A ((2-135))
---VAYIAIGSNLASPLEQVNAALKALGDIPESHILTVSSFYRTPPLGPQDAPDYLNAAVALETSLAPEELLNHTQRIELQQGRVRKAERWGPRTLDLDIMLFGNEVINTERLTVPHYDMKNRGFMLWPLFEIAPEL-------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3HD2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -101308 for 971 contacts (-104.3/contact) +
2D Compatibility (PS) -13608 + (NN) -1839 + (LL) 2088
1D Compatibility (HY) -9600 + (ID) 3150
Total energy: -127417.0 ( -131.22 by residue)
QMean score : 0.622
(partial model without unconserved sides chains):
PDB file :
Tito_3HD2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3HD2-query.scw
PDB file :
Tito_Scwrl_3HD2.pdb
: