Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSEHYYSEKPSVKSNKQTWSFRLRNKDFTFTSDSGVFSKKEVDFGSRLLIDSFEEPEVEGGILDVGCGYGPIGLSLASDFKDRTIHMIDVNERAVELSNENAEQNGI---TNVKIYQSDLFSNVDSAQTFASILTNPPIRAGKK--VVHAIFEKSAEHLKASGELWIVIQKKQGAPSAIEKLEELFDEVSVVQKKKGYYIIKAKKV
4DCM Chain:A ((192-366))
--------------------------DWTIHNHANVFSRTGLDIGARFFMQHLPE-NLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGV-EPFRFNAVLCNPPF-----DNVAWEMFHHARRCLKINGELYIVANRHLD---YFHKLKKIFGNCTTIATNNKFVVLKAV--
General information:
TITO was launched using:
RESULT:
Template:
4DCM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -86840 for 1375 contacts (-63.2/contact) +
2D Compatibility (PS) -18016 + (NN) -6682 + (LL) 1704
1D Compatibility (HY) -16000 + (ID) 2450
Total energy: -128284.0 ( -93.30 by residue)
QMean score : 0.504
(partial model without unconserved sides chains):
PDB file :
Tito_4DCM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4DCM-query.scw
PDB file :
Tito_Scwrl_4DCM.pdb
: