Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSYDKVSQAKSIIIGTKQTVKALKRGSVKEVVVAKDADP-ILTSSVVSLAEDQGISVSMVESMKKLGKACGIEVGAAAVAIIL
3PAF Chain:B ((19-97))
---DAVAKAQQIKKGANEVTKAVERGIAKLVIIAEDVKPEEVVAHLPYLCEEKGIPYAYVASKQDLGKAAGVSRPASSVAII-
General information:
TITO was launched using:
RESULT:
Template:
3PAF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -64807 for 592 contacts (-109.5/contact) +
2D Compatibility (PS) -8552 + (NN) -2441 + (LL) 448
1D Compatibility (HY) -3600 + (ID) 1500
Total energy: -80452.0 ( -135.90 by residue)
QMean score : 0.746
(partial model without unconserved sides chains):
PDB file :
Tito_3PAF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3PAF-query.scw
PDB file :
Tito_Scwrl_3PAF.pdb
: