Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNVNQNKKVLFLTDIENGLEPILQEATNTSAENMLTIQSYGASISHPYGEIMRSVIFAIYQEDVEEIFVVGTKDKKTSAGNGLT-QLETMKDKIQTLDYLFQNCKPEFLGG-TVDEWLNENSSDTIEKSVDMIRHHPLVPS------YVKVRGLFVNHKGGKPSIAEVPDVKTGQAMPDHCLS
4O1K Chain:A ((45-218))
--AGQNPEYLWIGCSDSRIPAE--QITGLQPGDAFVHRNIANLVCNTDLNVMSVIEYAVKHLKVKHIVVCGHYGCGGVKAAMTPKDLGLMNPWLRNIRDVYRLHEKELDAIADEEARYERLVELNVYEQCRNVVKTAALQQSYAENGFPVIHGWVFNFRDGLLKDLNVDFETILKDIQ-----
General information:
TITO was launched using:
RESULT:
Template:
4O1K.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -42536 for 1292 contacts (-32.9/contact) +
2D Compatibility (PS) -17226 + (NN) -226 + (LL) 596
1D Compatibility (HY) -7200 + (ID) 850
Total energy: -67442.0 ( -52.20 by residue)
QMean score : 0.331
(partial model without unconserved sides chains):
PDB file :
Tito_4O1K.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4O1K-query.scw
PDB file :
Tito_Scwrl_4O1K.pdb
: