Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMSEEKIYDVIIIGAGPAGMTAAVYTSRANLSTL----MIERGIP-GGQMANTEDVENYPGF-ESILGPELSNKMFEHAKKFGAEYAYGDIKEV-IDGKEYKV---VKAGSKEYKARAVIIAAGAEYKKIGVPGEKELGGRGVSYCAVCDGA--FFKGKELVVVGGGDSAVEEGVYLTRFASKVTIVHRRDKLRAQSILQARAFDNEKVDFLWNKTVKEIHEENGKVGNVTLVDTVTGEESEFKTDGVFIYIGMLPLSKPFENLGITNEEGYIET-NDRMETKVEGIFAAGDIREKSLRQIVTATGDGSIAAQSVQHYVEELQETLKTLK
3ITJ Chain:B ((25-338))--------VTIIGSGPAAHTAAIYLARAEIKPILYEGMMANGIAAGGQLTTTTEIENFPGFPDGLTGSELMDRMREQSTKFGTEIITETVSKVDLSSKPFKLWTEFNEDAEPVTTDAIILATGASAKRMHLPGEETYWQKGISACAVCDGAVPIFRNKPLAVIGGGDSACEEAQFLTKYGSKVFMLVRKDHLRASTIMQKRAEKNEKIEILYNTVALEAKGDGKLLNALRIKNTKKNEETDLPVSGLFYAIGHTPATKIVAGQVDTDEAGYIKTVPGSSLTSVPGFFAAGDVQDSKYRQAITSAGSGCMAALDAEKYLTSLE-------


General information:
TITO was launched using:
RESULT:

Template: 3ITJ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain B - contact count / total energy / energy per contact / energy per residue : 1854 85486 46.11 284.00
target 2D structure prediction score : 0.56
Monomeric hydrophicity matching model chain B : 0.81

3D Compatibility (PKB) : 46.11
2D Compatibility (Sec. Struct. Predict.) : 0.56
1D Compatibility (Hydrophobicity) : 0.81
QMean score : 0.425

(partial model without unconserved sides chains):
PDB file : Tito_3ITJ.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3ITJ-query.scw
PDB file : Tito_Scwrl_3ITJ.pdb: