Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPKSKVRKK-----NDFTVSAV---SRTPMKVKVGP--SSVWFVSL------------------FIGLMLIG-----LIWLMVFQLAAIGSQAPT------ALNWMAQL-GPWNYAIAFAFMITGLLLTMRWH
2Z5B Chain:B ((1-178))
MISYEFQTHLPKENKELYVQATHFNNTILLQIRLNGEMDSTYEVSSKGLYDDEEEEFVRDHLSDYQVVTKLGDSADPKVPVVCVQIAELYRRVILPEQFSLLISMSSKIWSADDNDFGKLVFVLKCIKDMYA-
General information:
TITO was launched using:
RESULT:
Template:
2Z5B.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -90554 for 595 contacts (-152.2/contact) +
2D Compatibility (PS) -10003 + (NN) -2202 + (LL) 44
1D Compatibility (HY) -5600 + (ID) 500
Total energy: -108815.0 ( -182.88 by residue)
QMean score : 0.449
(partial model without unconserved sides chains):
PDB file :
Tito_2Z5B.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2Z5B-query.scw
PDB file :
Tito_Scwrl_2Z5B.pdb
: