Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNYSEVELLSRAHQLFAGDSRRPGLDAGTTPYGDLLSRAADLNVGAGQRRYQLAVDHSRAALLSAARTDAAAGAVITGAQRDRAWARRSTGTVLDEARSDTTVTAVMPIAQREAIRRRVARLRAQRAHVLTARRRARRHLAALRALRYRVAHGPGVALAKLRLPSPSGRAGIAVHAALSRLGRPYVWGATG-------------PNQFDCSGLVQWAYAQAGVHLDRTTYQQINEGIPVPRSQVRPGDLVFPHP---GHVQLAIGNNLVVEAPHAGASVRVSSLGNNVQIRRPLSGR
4Q4G Chain:X ((1079-1197))
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------QASEYVIRRGMSQIGVPYSWGGGNAAGPSKGIDSGAGTVGFDASGLVLYSFAGVGIKLPHYSGSQYNLGRKIPSSQMRRGDVIFYGPNGSQHVTIYLGNGQMLEAPDVGLKVRVAPVRT-----------
General information:
TITO was launched using:
RESULT:
Template:
4Q4G.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -52980 for 734 contacts (-72.2/contact) +
2D Compatibility (PS) -11148 + (NN) -3234 + (LL) 13448
1D Compatibility (HY) -8800 + (ID) 1850
Total energy: -64564.0 ( -87.96 by residue)
QMean score : 0.498
(partial model without unconserved sides chains):
PDB file :
Tito_4Q4G.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4Q4G-query.scw
PDB file :
Tito_Scwrl_4Q4G.pdb
: