Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MQDSIFNLLTEEQLRGRNTLKWNYFGPDVVPLWLAEMDFPTAPAVLDGVRACVDNEEFGYPPLGEDSLPRATADWCRQRYGWCPRPDWVRVVPDVLKGMEVVVEFLTRPESPVALPVPAYMPFFDVLHVTGRQRVEVPMVQQDSGRYLLDLDALQAAF-VRGAGSVIICNPNNPLGTAFTEAELRAIVDIAARHGARVIADEIWAPVVYG-SRHVAAASVSEAAAEVVVTLVSASKGWNLPGLMCAQVILSNRRDAHDWDRINMLH-RMGASTVGIRANIAAYHHGESWLDELLPYLRANRDHLARALPELAPGVEVNAPDGTYLSWVDFRALA-LPSEPAEYLLSKAKVALSPGIPFGAAVGSGFARLNFATTRAILDRAIEAIAAALRDIID |
| 3DZZ Chain:A ((5-389)) | ---KQYDFT-HVPKRQGNSIKWGVLKEKELPMWIAEMDFKIAPEIMASMEEKLKVAAFGYESVP-AEYYKAVADWEEIEHRARPKEDWCVFASGVVPAISAMVRQFTSPGDQILVQEPVYNMFYSVIEGNGRRVISSDLIY-ENSKYSVNWADLEEKLATPSVRMMVFCNPHNPIGYAWSEEEVKRIAELCAKHQVLLISDEIHGDLVLTDEDITPAFTVDWDAKNWVVSLISPSKTFNLAALHAACAIIPNPDLRARAEESFFLAGIGEPNLLAIPAAIAAYEEGHDWLRELKQVLRDNFAYAREFLAKEVPEVKVLDSNASYLAWVDISALGMNAEDFCKYLREKTGLIISAGNGYRG-NGHEFVRINLACPKELVIDGMQRLKQGVLNL-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3DZZ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -266933 for 3372 contacts (-79.2/contact) +
2D Compatibility (PS) -41731 + (NN) -24244 + (LL) 800
1D Compatibility (HY) -28400 + (ID) 5150
Total energy: -365658.0 ( -108.44 by residue)
QMean score : 0.460
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