Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGWVAKIFRVGRVVEPAAPLPAAIAEPPAGVRGSLQIRHVDAGSCNGCEVEISGAFGPVYDA---------------ERFGAR-------LVASPQHADALLVTGVVTHNM---------AGPLRKTLEATPRPRVVIACGDCALNRGVFADA--YGVVGAVGEVVP--VDVEIAGCPPTPAAIMAALRSVTGK
4IUC Chain:S ((5-164))
--------------------------------PRTPVLWLHGLECTCCSESFIRSAHPLAKDVVLSMISLDYDDTLMAAAGHQAEAILEEIMTKYKGNYILAVEGNPPLNQDGMSCIIGGRPFIEQLKYVAKDAKAIISWGSCASWGCVQAAKPNPTQATPVHKVITDKPIIKVPGCPPIAEVMTGVITYML--
General information:
TITO was launched using:
RESULT:
Template:
4IUC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -76334 for 927 contacts (-82.3/contact) +
2D Compatibility (PS) -13725 + (NN) -6135 + (LL) 2296
1D Compatibility (HY) -2800 + (ID) 1000
Total energy: -97698.0 ( -105.39 by residue)
QMean score : 0.362
(partial model without unconserved sides chains):
PDB file :
Tito_4IUC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4IUC-query.scw
PDB file :
Tito_Scwrl_4IUC.pdb
: