Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSAKAIDYRTRLSDFMTEHVFGAEADYDDYRRAAGPADHTAPPIIEELKTKAKDRGLWNLFLSAESGLTNLEYAPLAEMTGWSMEIAPEALNCAA-----PDTGNMEILHMFGTEQQRAQWLRPLLDGKIRSAFSMTEPAVASSDARNIETTISRDGADYVINGRKWWTSGAADPRCKILIVMGRTNPDAAAHQQQSMVLVPIDTPGVTIVRSTPVFGWQDRHGHCEIDYHNVRVPATNLLGEEGSGFAIAQARLGPGRIHHCMRALGAAERALALMVNRVRNRVAFGRPLAEQGVVQQAIAQSRNEIDQARLLCEKAAWTIDQHGNKEARHLVAMIKAVAPRVACDVIDRAIQVHGAAGVSDDTPLARLYGWHRAMRIFDGPDEVHLRSIARAELSREKSTFAAAVT |
| 4M9A Chain:C ((47-383)) | ---------------------------------------------DEVVAQMGELGFLGMIVPADWGGSYTDYVAYALAL---EEIAAGCASCATLVSVHNSVGCGPVLN-YGTTEQKERWLRDLASGKTVGAFSLTEPH-A----HNLRTRAELRDGKWILNGSKQFVTNGA--RAGLAIVFAMTDPDEGKRGLSAFV-VPTDTPGFIVGKPEKKMGIRASD-TCPITLENCAIPQENLLGKRGEGLKIALSNLEGGRIGIAAQATGIARAAFDRARRYARERVQFGKPIAEHQAIAEKLANMATQINAARLLTHHAARL--RTAGLPCLSEASQAKLFASEMAEAVCSDAIQIHGGYGFLVDYEVERHYRDARITQIYEGTSEVQRMVIAR--------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4M9A.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -176201 for 2901 contacts (-60.7/contact) +
2D Compatibility (PS) -35322 + (NN) -18692 + (LL) 4508
1D Compatibility (HY) -13200 + (ID) 5300
Total energy: -244207.0 ( -84.18 by residue)
QMean score : 0.481
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