Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MAFPRTLAILAAAAALVVACSHGGTPTGSSTTSGASPATPVAVPVPRSCAEPAGIPALLSPRDKLAQLLVVGVRDAA--------------DAQAVVTNYHVGGILIGSDTDLTIFDGALAEIVAGGGPLPLAVSVDEEGGRVSRLRSLIGGTGPSARELAQTRTV------QQVRDLARDRGRQMRKLGITIDFAPVVDVTDAPDDTVIGDRSFGSDPATVTAYAGAYAQGLRDAGVLPVLKHFPGHGRGSGDSHNGGVTTP-PLDDLVGDDLVPYRTLVTQAPVGVMVGHLQVPGLTGSEPASLSKAA-VNLLRTGTGYGAPPFDGPVFSDDLSGMAAISDRFGVSEAVLRTLQAGADIALWVTTKEVPAVLDRLEQALRAGELPMSAVDRSVVRVATMKGPNPGCGR |
3SQL Chain:A ((8-356)) | ---------------------------------------------------PLPPVESLSLRQAIAQMIVVRGAGYLFDYERPYPQWEADQTTLQRWIEAGIGGVILLGGSAA-EVAQKTKQLQSW-AEIPLLIAADIEEGVGQRFR-GAT-EFPPPMAFGEIWRTDPHQAIALAETMGATTAQEALSLGINWVLAPVLDVNNNPHNPVINIRAFGETPDQVSALGTAFIRGAQQYAVLTTAKHFPGHGDTATDSHLALPTISHDDTRLNTVELPPFKAAIQGGVDAVMNAHLMIPAWDQQYPATLSPAILTGQLRHKLG-----FKGLIVTDALV-MGGITQFAAPDTVVVQAIAAGADILLMPPDV--DGAIIAIETAIKTGQLSESRIYESVERIWQAKQKILTAT- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3SQL.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -145028 for 2976 contacts (-48.7/contact) +
2D Compatibility (PS) -35665 + (NN) -22412 + (LL) 2524
1D Compatibility (HY) -11600 + (ID) 4400
Total energy: -216581.0 ( -72.78 by residue)
QMean score : 0.466
|
|
|