Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTTIGTRKRVAVVTGASSGIGEATARTLAAQGFHVVAVARRADRITALANQI---GGTAI--VADVTDDAAVEALARA----LSRVDVLVNNAGGAKGLQFVADADLEHWRWMWDTNVLGTLRVTRALLPKLIDSGDGLIVTVTSIAAIEVYDGGAGYTAAKHAQGALHRTLRGELLGKPVRLTEIAPGAVETEFSLVRFDGDQQRADAVYAGMTPLVAADVAEVIGFVATRPSHVNLDQIVIRPRDQASASRRATHPVR
3TFO Chain:D ((5-237))
--------KVILITGASGGIGEGIARELGVAGAKILLGARRQARIEAIATEIRDAGGTALAQVLDVTDRHSVAAFAQAAVDTWGRIDVLVNNAG-VMPLSPLAAVKVDEWERMIDVNIKGVLWGIGAVLPIMEAQRSGQIINIGSIGALSVVPTAAVYCATKFAVRAISDGLRQE--STNIRVTCVNPGVVE--------------------AIA-LQPADIARAVRQVIEAPQSVDTTEITIRP---------------
General information:
TITO was launched using:
RESULT:
Template:
3TFO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -139287 for 1675 contacts (-83.2/contact) +
2D Compatibility (PS) -22550 + (NN) -9849 + (LL) 3084
1D Compatibility (HY) -16000 + (ID) 4300
Total energy: -188902.0 ( -112.78 by residue)
QMean score : 0.537
(partial model without unconserved sides chains):
PDB file :
Tito_3TFO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TFO-query.scw
PDB file :
Tito_Scwrl_3TFO.pdb
: