Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSVNDGVDQMGAEPDIMEFVEQMGGYFESRSLTRLAGRLLGWLLVCDPERQSSEELATALAASSGGISTNARMLIQFGFI-----ERLAVAGDRRTYFRLRPNAFAAGERERIRAMAELQDLAD-V-GLRALGDAPPQRSRRLREMR--DLLAYMENVVSDALGRYSQRTGEDD
3BRJ Chain:A ((9-175))
-NESEIIERLNSAPSVRGFFIATVDVFNESIDGLIQRIFRK----DNFAVQSVVGPLLQDSGPLGDLSVRLKLLFGLGVLPDDIYHDIEDIIKLKNHLNSDASDYEFTDPNILEPIKKLHLVKKMGMVQLEVNEPDDDIDLEFYQLQLQRQQQIIKSGLSLAIVEICNELGK--
General information:
TITO was launched using:
RESULT:
Template:
3BRJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -30843 for 1027 contacts (-30.0/contact) +
2D Compatibility (PS) -17013 + (NN) -5911 + (LL) 756
1D Compatibility (HY) -6000 + (ID) 650
Total energy: -59661.0 ( -58.09 by residue)
QMean score : 0.275
(partial model without unconserved sides chains):
PDB file :
Tito_3BRJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3BRJ-query.scw
PDB file :
Tito_Scwrl_3BRJ.pdb
: