Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQEPLRVPPSAPARLVVLASGTGSLLRSLLDAAVGDYPARVVAVGVDRECRAA--EIAAEASVPVFTVRLADHPSRDAWDVAITAATAAHEPDLVVSAGFMRILGPQFLSRFYGRTLNTHPALLPAFPGTHGVADALAYGVKVTGATVHLVDAGTDTGPILAQQPVPVLDGDDEETLHERIKVTERRLLVAAVAALATHGVTVVGRTATMGRKVTIG
1MEN Chain:A ((16-197))
----------------VLISGTGSNLQALIDSTREPNSSAQIDIVISNKAAVAGLDKAERAGIPTRVINHKLYKNRVEFDSAIDLVLEEFSIDIVCLAGFMRILSGPFVQKWNGKMLNIHPSLLPSFKGSNAHEQALETGVTVTGCTVHFVAEDVDAGQIILQEAVPVKRGDTVATLSERVKLAEHKIFPAALQLVAS-------------------
General information:
TITO was launched using:
RESULT:
Template:
1MEN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -117751 for 1418 contacts (-83.0/contact) +
2D Compatibility (PS) -20118 + (NN) -9005 + (LL) 2220
1D Compatibility (HY) -11200 + (ID) 3350
Total energy: -159204.0 ( -112.27 by residue)
QMean score : 0.577
(partial model without unconserved sides chains):
PDB file :
Tito_1MEN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1MEN-query.scw
PDB file :
Tito_Scwrl_1MEN.pdb
: