Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRVAVLSGAGISAESGVPTFRDDKNGLWARFDPYELSSTQGWLRNPERVWGWYLWRHYLVANVEPNDGHRAIAAW-----QDHAEVSVITQNVDDLHERAGSGAVHHLHGSLFEFRCARCG-------VPYTDAL-------PEMPEPAIEVEP-PVCD---CGGLIRPDIVWFGEPLPEEPWRSAVEATGSADVMVVVGTSAIVYPAAGLPDLALARGTAVIEVNPEPTPLSGSATISIRESASQALPGLLERLPALLK
4UU8 Chain:B ((26-275))
--IAIITGAGVSAESGVPTFRG-PGGFWRKWQAQDLATPEAFSRDPSLVWEFYHYRREVMRSKMPNPAHLAIAECEARLGQQGRSVVIITQNIDELHHRAGSKHVYEIHGSLFKTRCMSCGEVKANHKSPICPALDGKGAPDPNTKEARIPVELLPRCERKSCNGLLRPHVVWFGETLDSDILTAVERELEKCDLCLVVGTSSIVYPAAMFAPQVASRGVPVAEFNMECTPATQRFKYHFEGPCGSTLPPALE-------
General information:
TITO was launched using:
RESULT:
Template:
4UU8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -107711 for 1781 contacts (-60.5/contact) +
2D Compatibility (PS) -24412 + (NN) -14171 + (LL) 928
1D Compatibility (HY) -18000 + (ID) 4850
Total energy: -168216.0 ( -94.45 by residue)
QMean score : 0.460
(partial model without unconserved sides chains):
PDB file :
Tito_4UU8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4UU8-query.scw
PDB file :
Tito_Scwrl_4UU8.pdb
: