Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MARQVFDDKLLAVISGNSIGVLATIKHDGRPQLSNVQYHFDPRKLLIQVSIAEPRAKTRNLRRDPRASILVDADDG---WSYAVAEGTAQLTPPAAA---PDDDTVEALIALYRNIAGEHSDWDDYRQAMVTDRRVLLTLPISHVYGLPPGMR
2HQ9 Chain:A ((5-147))
--RTLSALECTKVLTANRVGRLACA-KDGQPYVVPLYYAYSD--AHLYAFS-MPGKKIEWMRANPRVSVQVDEHGQGRGWKSVVVDGRYEELPDLIGHKLQRDHAWSVLSKHTDWWE---------------APHVFFRILIEQVSGREA---
General information:
TITO was launched using:
RESULT:
Template:
2HQ9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -56934 for 873 contacts (-65.2/contact) +
2D Compatibility (PS) -13404 + (NN) -6345 + (LL) 1644
1D Compatibility (HY) -3600 + (ID) 1400
Total energy: -80039.0 ( -91.68 by residue)
QMean score : 0.477
(partial model without unconserved sides chains):
PDB file :
Tito_2HQ9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2HQ9-query.scw
PDB file :
Tito_Scwrl_2HQ9.pdb
: