Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MRYPLGEALLALYRWRGPLINAGVGGHGYTYLLGAEANRFVFAN-ADAFSWSQTFESLVPV-DGPTALI-VSDGADHRRRRSVVAPGLRH--HHVQRYVATMVSNIDTVIDGWQP--GQRLDIYQELRSAVRRSTAESLFGQRLAVHSD---FLGEQLQPLLDLTRRPPQVMRLQQR--VNSPGWRRAMAARKRIDDLIDAQIADARTAP--RPDDHMLTTLISGCSE------EGTTLSDNEIRDSIVSLITAGYETTSGALAWAIYALLTVPGTWESAASEVARVLGG-RVPAADDLSALTYLNGVVHETLRLYSPGVIS-ARRVLRDLWFDGHRIRAGRLLIFSAYVTHRLPEIWPEPTEFRPLRWDPNAADYRKPAPHEFIPFSGGLHRCIGAVMATTEMTVILARLVARAMLQLPAQRTHRIRAANFAALRPWPGLTVEIRKSAPAQ |
| 3SWZ Chain:A ((30-450)) | ---HMHNNFFKLQKKYGPIYSVRMGTKTTVIVGHHQLAKEVLIKKGKDFSGRPQMATLDIASNNRKGIAFADSGAHWQLHRRLAMATFALFKDGDQKLEKIICQEISTLCDMLATHNGQSIDISFPVFVAVTNVISLICFNTSYKNGDPELNVIQNYNEGIIDNLSKDSLVDLVPWLKIFPNKTLEKLKSHVKIRNDLLNKILENYKEKFRSDSITNMLDTLMQAKMNSDNGDQDSELLSDNHILTTIGDIFGAGVETTTSVVKWTLAFLLHNPQVKKKLYEEIDQNVGFSRTPTISDRNRLLLLEATIREVLRLRPVAPMLIPHKANVDSSIGEFAVDKGTEVIINLWALHHNEKEWHQPDQFMPERFLNPAGTQLISPSVSYLPFGAGPRSCIGEILARQELFLIMAWLLQRFDLEVP-------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3SWZ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -208660 for 3137 contacts (-66.5/contact) +
2D Compatibility (PS) -41447 + (NN) -8457 + (LL) 3004
1D Compatibility (HY) -18800 + (ID) 4050
Total energy: -278410.0 ( -88.75 by residue)
QMean score : 0.390
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