Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVAMLFYVDTLPDTGAVAVVDGDEGFHAATVRRIRPGEQLVLGDGVGRLARCVVEQAGRGGLRARVLRRWSVPPVRPPVTVVQALPKSERSELAIELATEAGADAFLAWQAARCVANWDGARVDKGLRRWRAVVRSAARQSR-RARIPPVDGVLSTPMLVQRVREEVAAGAAVLVLHEEATERIVDIAAAQ-AGSLMLVVGPEGGIAPDELAALTDAGAVAVRLGPTVLRTSTAAAVALGAVGVLTSRWDASASDCEYCDVTRR
2QMM Chain:A ((3-197))
AVRGFLIVGNKAFTQPF------------------SLNDLPGAGRMDVLCRCTSQAL------------FISHGIRRDVEVYLLLLGPPSPPKSILIKGD------------------EVRRMSPDERNVAGHIKKALAVECGKSWKKVHSGVYVSRKGLEELIEELSEKYSIIYLKEDG----VDISNAQLPPNPLFVIGDHEGLTEEQEKVVERYAALKLSLSPLSLLAEQCVVIAHHHLDRLQF-----------------
General information:
TITO was launched using:
RESULT:
Template:
2QMM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -134373 for 1604 contacts (-83.8/contact) +
2D Compatibility (PS) -21348 + (NN) -14708 + (LL) 5260
1D Compatibility (HY) -10000 + (ID) 1750
Total energy: -176919.0 ( -110.30 by residue)
QMean score : 0.469
(partial model without unconserved sides chains):
PDB file :
Tito_2QMM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2QMM-query.scw
PDB file :
Tito_Scwrl_2QMM.pdb
: