Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTTARDIMNA--GVTCVGEHETLTAAAQYMREHDIGALPICGDD-DRLHGMLTDRDIVIKGLAAGLDPNTATAGELARDSIYYVDANASIQEMLNVMEEHQVRRVPVIS-EHRLVGIVTEADIARHLPEHAIVQFVKAICSPMALAS
3NQR Chain:A ((3-124))
-QRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDL-LPFMRSDA--EAFSMDKVLRT-AVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILELI--------------------
General information:
TITO was launched using:
RESULT:
Template:
3NQR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -77359 for 799 contacts (-96.8/contact) +
2D Compatibility (PS) -12859 + (NN) -4925 + (LL) 2092
1D Compatibility (HY) -10000 + (ID) 1200
Total energy: -104251.0 ( -130.48 by residue)
QMean score : 0.557
(partial model without unconserved sides chains):
PDB file :
Tito_3NQR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3NQR-query.scw
PDB file :
Tito_Scwrl_3NQR.pdb
: